hdxstat-streamline

Broncio Aguilar-Sanjuan and Oliver M. Crook

Abstract

This vignette describes the essential HDX-MS data curation, analysis, and visualisation functions from hdxstats-streamline, a module with routines using functions from hdxstats, an R package to analyse a mass-spectrometry based hydrogen deuterium exchange (HDX) experiment, with focus on empirical Bayes functional models and visualisations.

Package

hdxstats 0.99.1

library("hdxstats")

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library("pheatmap")
library("RColorBrewer")
library("viridisLite")
library("viridis")

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library("ggplot2")
library("readr")

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1 Data curation pipeline

1.1 Example 1

• If you have an input CSV file only

# INPUT
csv_filepath <- system.file("extdata", "MBP.csv", package = "hdxstats") # input csv with HDX-MS datas

# OUTPUT
output_file = "../vignettes/tests/MBP_qDF.rsd" # QFeatures object output path
output_parameters = "../vignettes/tests/MBP_qDF.hdxp"

# Run curation pipeline with 'interactive' mode
hdx_data <- extract_hdx_data(csv_filepath, save_qDF = output_file, save_parameters = output_parameters, interactive = TRUE)

1.2 Example 2

If you have an input CSV file and a parameter_file

# INPUT
csv_filepath <- csv_filepath <- system.file("extdata", "MBP.csv", package = "hdxstats") # input csv with HDX-MS datas
parameter_file <- "../vignettes/tests/MBP_qDF.hdxp"

# OUTPUT
output_file = "../vignettes/tests/MBP_qDF.rsd" # QFeatures object output path

# Run curation pipeline provided 'parameter_file'
hdx_data <- extract_hdx_data(csv_filepath, save_qDF = output_file, parameter_file = parameter_file)

2 CASE STUDY 1

2.1 Curate HDX-MS CSV data

Use parameter_file

csv_filepath <- system.file("extdata", "MBP.csv", package = "hdxstats")
parameter_file <- system.file("extdata", "MBP_qDF.hdxp", package = "hdxstats") # parameter file
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = parameter_file)

## [1] "INFO: You gave me a CSV file of your HDX-MSM data"
## [1] "INFO: I will pre-process your data parse it using QFeatures ..."
## [1] "INFO: You provided a 'parameter_file', I will extract parameters from this to format your output QFeatures data object."
## [1] "INFO: You provided a list of 'parameters', I will extract parameters from this to format your output QFeatures data object."
## [1] "INFO: Stripped your 'Exposure_Time' values from non-numeric characters."
## [1] "INFO: Reformatting your data to a wide format..."
## [1] "INFO: Parsing your data as a qDF object class instance. Method: parseDeutData"
## [1] "INFO: Saving a list of 'Start' and 'End' residue numbers into the @metadata slot of output qDF object"
## [1] "WARNING: Your output data is not normalised."
## [1] "WARNING: Your output data was not saved. You can provide an output path with 'save = my_path'"
## [1] "INFO: I pre-processed you input CSV data content and now it's available as a QFeatures instance"

pheatmap(t(assay(hdx_data)),
         cluster_rows = FALSE, 
         cluster_cols = FALSE,
         color = brewer.pal(n = 9, name = "BuPu"),
         main = "MBP: Deu Incorporation", 
         fontsize = 14,
         legend_breaks = c(0, 1, 2, 3, 4, 5, 6, max(assay(hdx_data))),
         legend_labels = c("0", "1", "2", "3", "4", "5", "6", "Incorporation"))

2.2 Analyse Deuterium Uptake Kinetics

# INPUT
data_selection <- hdx_data[,1:100]
all_peptides <- rownames(data_selection)[[1]]
starting_parameters <- list(a = NULL, b = 0.001,  d = NULL, p = 1)

# OUTPUT
results <- analyse_kinetics(data = data_selection,
                            method = "dfit",
                            peptide_selection = all_peptides[37],
                            start = starting_parameters)

## [1] "INFO: Performing differential fitting of Deuterium uptake kinetics. Method: 'hdxstats::differentialUptakeKinetics' "
## [1] "INFO: You did not specify a 'formula' for your fitting model."
## [1] "INFO: Fitting will be performed for (default): 'formula <- value ~ a * (1 - exp(-b*(timepoint)^p)) + d' "

## Warning in fitting_method(object = data, feature = peptide_selection, start =
## starting_parameters): NAs introduced by coercion

2.3 Visualise Functional Analysis Results

View fitting curves of Deu-uptake kinetics for all available conditions associated to selected peptides

graphics_kinetics <- visualise_hdx_data(results, type="kinetics") 

## [1] "INFO: I found  7  models in your results data."

graphics_kinetics

2.4 Play with another selection

# INPUT
data_selection <- hdx_data[,1:24]
all_peptides <- rownames(data_selection)[[1]]
starting_parameters <- list(a = NULL, b = 0.001,  d = NULL, p = 1)

# OUTPUT
results <- analyse_kinetics(data = data_selection,
                            method = "fit",
                            peptide_selection = all_peptides,
                            start = starting_parameters)

## [1] "INFO: Performing fitting of Deuterium uptake kinetics. Method: 'hdxstats::fitUptakeKinetics' "

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
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## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

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## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
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## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

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## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

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## Warning in differentialUptakeKinetics(object = object, feature = x, start =
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## [1] "model fit failed, likely exessive missing values"

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## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

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## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

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## [1] "model fit failed, likely exessive missing values"

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## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in stats::optim(x = c(0.00109178357660077, 4.02437669894543e-05, : one-dimensional optimization by Nelder-Mead is unreliable:
## use "Brent" or optimize() directly

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in stats::optim(x = c(0.00153823834115607, 0.00188329333146131, : one-dimensional optimization by Nelder-Mead is unreliable:
## use "Brent" or optimize() directly

## Warning in densfun(x, parm, ...): NaNs produced

graphics_kinetics <- visualise_hdx_data(results, type="kinetics")

## [1] "INFO: I found  102  models in your results data"
## [1] "INFO: You selected 'kinetics' to visualise from your results"

graphics_forest <- visualise_hdx_data(results, type="forest")

## [1] "INFO: I found  102  models in your results data."
## [1] "INFO: You selected 'forest' to visualise from your results"

Combine graphical outputs in a single canvas

(graphics_kinetics[[1]] | graphics_kinetics[[2]] | graphics_kinetics[[3]]) /
  (graphics_forest[[1]] | graphics_forest[[2]] | graphics_forest[[3]] ) 

3 CASE STUDY 2

Single-domain antibody (sdAb) binding assays to HOIP

3.1 Curate HDX-MS CSV data

Use parameter_file

csv_filepath <- system.file("extdata", "N64184_1a2_state.csv", package = "hdxstats")
parameter_file <- system.file("extdata", "N64184_1a2_state.hdxp", package = "hdxstats")
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = parameter_file)

## [1] "INFO: You gave me a CSV file of your HDX-MSM data"
## [1] "INFO: I will pre-process your data parse it using QFeatures ..."
## [1] "INFO: You provided a 'parameter_file', I will extract parameters from this to format your output QFeatures data object."
## [1] "INFO: You provided a list of 'parameters', I will extract parameters from this to format your output QFeatures data object."
## [1] "INFO: Stripped your 'Exposure_Time' values from non-numeric characters."
## [1] "INFO: Your original_time_units == 'm'. I will convert your 'Exposure_Time' values to seconds (s)."
## [1] "INFO: Your 'Replicate' column appears to be NA. I will add this column with 1 values just to label your data."
## [1] "INFO: Your 'Charge' column appears to be NA. I will add this column with 0 values just to label your data."
## [1] "INFO: Reformatting your data to a wide format..."
## [1] "INFO: Parsing your data as a qDF object class instance. Method: parseDeutData"
## [1] "INFO: Saving a list of 'Start' and 'End' residue numbers into the @metadata slot of output qDF object"
## [1] "WARNING: Your output data is not normalised."
## [1] "WARNING: Your output data was not saved. You can provide an output path with 'save = my_path'"
## [1] "INFO: I pre-processed you input CSV data content and now it's available as a QFeatures instance"

pheatmap(t(assay(hdx_data)),
         cluster_rows = FALSE, 
         cluster_cols = FALSE,
         color = brewer.pal(n = 9, name = "BuPu"),
         main = "HOIP-RBR / dAb: Deu Incorporation", 
         fontsize = 14,
         legend_breaks = c(0, 1, 2, 3, 4, 5, 6, max(assay(hdx_data))),
         legend_labels = c("0", "1", "2", "3", "4", "5", "6", "Incorporation"))

3.2 Analyse Deuterium Uptake Kinetics

# INPUT 
data_selection <- hdx_data[,1:33]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = 0.01,  d = NULL)
formula = value ~ a * (1 - exp(-b*(timepoint))) + d

# OUTPUT
results <- analyse_kinetics(data = data_selection, 
                            method = "dfit", 
                            peptide_selection = all_peptides[3], 
                            start = starting_parameters,
                            formula = formula)

## [1] "INFO: Performing differential fitting of Deuterium uptake kinetics. Method: 'hdxstats::differentialUptakeKinetics' "
## [1] "INFO: You specified your own 'formula' for your fitting model."

## Warning in fitting_method(object = data, feature = peptide_selection, start =
## starting_parameters, : NAs introduced by coercion

graphics_kinetics <- visualise_hdx_data(results, type="kinetics")

## [1] "INFO: I found  11  models in your results data."

# Customise plot
custom_colors <- scale_color_manual(values = colorRampPalette(brewer.pal(8, name = "Set2"))(11))
graphics_kinetics + custom_colors

## Scale for 'colour' is already present. Adding another scale for 'colour',
## which will replace the existing scale.

Remove intercept Deu uptake values

## [1] "INFO: You have 110 peptide-charge paired values"
## [1] "INFO: For  GPGQECA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CAVCGWALPHNRM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CAVCGWALPHNRMQAL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CAVCGWALPHNRMQALTSCE_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  AVCGWALPHNRM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  AVCGWALPHNRMQAL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  AVCGWALPHNRMQALTSCE_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  VCGWALPHNRM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  VCGWALPHNRMQA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  VCGWALPHNRMQAL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  VCGWALPHNRMQALTSC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  VCGWALPHNRMQALTSCE_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  WALPHNRM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  WALPHNRMQA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  WALPHNRMQAL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  WALPHNRMQALTS_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  WALPHNRMQALTSCE_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  QALTSCE_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CTICPDC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CTICPDCF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  TICPDCF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  FRQHFTIA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RQHFTIA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RQHFTIAL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LKEKHITD_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LKEKHITDM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LKEKHITDMVC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  KEKHITDM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  KEKHITDMVC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  KEKHITDMVCPACGRPDLTDDTQL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  MVCPACGRPDLTD_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  MVCPACGRPDLTDDTQL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  VCPACGRPDLTDDTQL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  PACGRPDLTD_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  PACGRPDLTDDTQL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  IQLRESLEPDA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LRESLEPDA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RESLEPDA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RESLEPDAY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RESLEPDAYAL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RESLEPDAYALF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RESLEPDAYALFHKKLTEGVL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  YALFHKKLTEGVL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ALFHKKLTEGVL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  FHKKLTEGVL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  HKKLTEGVL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  MRDPKFL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  MRDPKFLWC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  MRDPKFLWCAQ_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  FIYEREQL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  IYEREQL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  REQLEATCPQCHQTF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  EATCPQCHQTF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  EATCPQCHQTFC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CVRCKRQWEEQHRGRSCE_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CVRCKRQWEEQHRGRSCED_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CVRCKRQWEEQHRGRSCEDFQN_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  DFQNWKRMNDPEYQAQGLAM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  FQNWKRMNDPEY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  FQNWKRMNDPEYQAQGL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  FQNWKRMNDPEYQAQGLAM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  FQNWKRMNDPEYQAQGLAMY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  WKRMNDPEYQAQGLAM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  KRMNDPEYQAQGLAM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  MYLQENGIDCPKCKF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  YLQENGIDCPKCKF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  YLQENGIDCPKCKFSY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  YLQENGIDCPKCKFSYA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LQENGIDCPKCKF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LQENGIDCPKCKFSYA_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  SYALARGGCMHF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  SYALARGGCMHFHCTQCRHQFCSGC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LARGGCMHF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LARGGCMHFHCTQCRHQFCSGC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LARGGCMHFHCTQCRHQFCSGCY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ARGGCMHFHCTQCRHQFCSGC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  HFHCTQCRHQFCSGC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  HCTQCRHQFCSGC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  YAKNKCPEPNC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RVKKSLHGHHPRDCL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RVKKSLHGHHPRDCLF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LRLQKLLQDNN_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LRLQKLLQDNNVM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LRLQKLLQDNNVMF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RLQKLLQDNN_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: All Deu uptake values for the zero timepoint are NA. I will take the minimum across all conditions."
## [1] "INFO: For  RLQKLLQDNNVM_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RLQKLLQDNNVMF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  QKLLQDNN_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  QKLLQDNNVMF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LQDNNVMF_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  NTEPPAGARAVPGGG_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  NTEPPAGARAVPGGGC_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  NTEPPAGARAVPGGGCRV_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  NTEPPAGARAVPGGGCRVIEQ_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CQAHYKEYL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  CQAHYKEYLVS_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  HYKEYLVS_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  VSLINAHSLDPATL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LINAHSLDPATL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  INAHSLDPATL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LETATERYLHVRPQPLAGEDPPAY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ETATERYLHVRPQPLAGEDPPAY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ETATERYLHVRPQPLAGEDPPAYQ_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ATERYLHVRPQPLAGEDPPAY_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ATERYLHVRPQPLAGEDPPAYQ_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ATERYLHVRPQPLAGEDPPAYQARL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ERYLHVRPQPLAGEDPPAYQ_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  ERYLHVRPQPLAGEDPPAYQARL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  RYLHVRPQPLAGEDPPAYQARL_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: For  LQKLTEEVPLGQSIPRRRK_0 , you have 11 conditions"
## [1] "INFO: You have 1 replicates, for apo"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb13_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb25_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb27_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb2_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_1"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"
## [1] "INFO: You have 1 replicates, for dAb6_2"
## [1] "INFO: At least one Deu uptake values for the zero timepoint is NA. I will take the minimum of all zero timepoints"

Let’s select column data for the APO state and a bound state with a single domain antibody labelled as dAb25_1

# INPUT 
data_selection <- hdx_data_nointercept[,c(1:3, 10:12)]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL)
formula = value ~ a * (1 - exp(-0.05*(timepoint)))

# OUTPUT
results <- analyse_kinetics(data = data_selection,
                            method = "fit",
                            peptide_selection = all_peptides, 
                            start = starting_parameters,
                            formula = formula, 
                            maxAttempts = 1)

## [1] "INFO: Performing fitting of Deuterium uptake kinetics. Method: 'hdxstats::fitUptakeKinetics' "

## Warning in stats::optim(x = c(0.0236131052993046, 0.0111597572182561, 0.130743973421311, : one-dimensional optimization by Nelder-Mead is unreliable:
## use "Brent" or optimize() directly

## Warning in stats::optim(x = c(0.0466716914066292, 0.0136102695934951, 0.0410059048545416, : one-dimensional optimization by Nelder-Mead is unreliable:
## use "Brent" or optimize() directly

## Warning in densfun(x, parm, ...): NaNs produced

graphics <- visualise_hdx_data(results, type="kinetics")

## [1] "INFO: I found  110  models in your results data"
## [1] "INFO: You selected 'kinetics' to visualise from your results"

graphics[[36]] + 
graphics[[42]] +
graphics[[43]] +
graphics[[65]] +
graphics[[68]] +
graphics[[70]] +
graphics[[52]] +
graphics[[53]] +
plot_layout(guides = 'collect')

3.3 Visualise Functional Analysis Results

graphics_manhattan <- visualise_hdx_data(results, data_selection= data_selection, type="manhattan")

## [1] "INFO: I found 6 columns in your data selection. I will split your data selection into two and take their difference."
## [1] "X0rep1condapo"   "X30rep1condapo"  "X300rep1condapo"
## [1] "X0rep1conddAb25_1"   "X30rep1conddAb25_1"  "X300rep1conddAb25_1"

## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.
## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.
## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.

## [1] "INFO: You have  3 Manhattan plots"
## [1] "INFO: You selected 'manhattan' to visualise from your results"

graphics_manhattan[[2]] / graphics_manhattan[[3]] + plot_layout(guides = 'collect')

fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
graphics_epitope <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = fasta_filepath)

## [1] "INFO: You selected 'epitope' to visualise from your results"
## [1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."

## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.

## [1] "INFO: You have  2 parts for your Epitope map"

graphics_epitope[[1]]/(graphics_epitope[[2]]) + 
plot_layout(guides = 'collect') & theme(legend.position = "right")

fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
graphics_epitope_heatmap <- visualise_hdx_data(results, type="epitope", level="residue", fasta = fasta_filepath)

## [1] "INFO: You selected 'epitope' to visualise from your results"
## [1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."

## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.

## [1] "INFO: You have  2 parts for your Epitope map"

graphics_epitope_heatmap[[1]]/(graphics_epitope_heatmap[[2]]) + 
plot_layout(guides = 'collect') & theme(legend.position = "right")

# INPUT
pdb_filepath <- system.file("extdata", "5edv_chainA_clean_renumbered.pdb", package = "hdxstats")
fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)

# OUTPUT
graphics_epitope_pdbview <- visualise_hdx_data(results, 
                                               type="epitope", 
                                               level= "residue", 
                                               fasta= fasta_filepath,
                                               pdb= pdb_filepath)

## [1] "INFO: You selected 'epitope' to visualise from your results"
## [1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."
## [1] "Your HDX input dataset has 379 entries"
## [1] "And excluding NA data you only have 379 entries"
## [1] "However, your input PDB has only 286 residues in total"
## [1] "Your scale limits are  0"    "Your scale limits are  1.37"
## [1] "Your values will be coloured using Viridis"

graphics_epitope_pdbview #%>% setSpin()

# INPUT
fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
qDF <- data_selection

# OUTPUT
graphics_protection_heatmap <- visualise_hdx_data(results, 
                                          type="protection", 
                                          data_selection=data_selection,
                                          level="residue",
                                          fasta = fasta_filepath)

## [1] "INFO: You selected 'protection' to visualise from your results"
## [1] "INFO: I found 6 columns in your data selection. I will split your data selection into two and take their difference."
## [1] "X0rep1condapo"   "X30rep1condapo"  "X300rep1condapo"
## [1] "X0rep1conddAb25_1"   "X30rep1conddAb25_1"  "X300rep1conddAb25_1"

## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.

## Warning in hdxdifference(object = data_selection, AAString = fasta_data[[1]], :
## NaNs produced

## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.

## [1] "INFO: You have  3 Protection/Deprotection heatmaps"

graphics_protection_heatmap[[3]][[1]] / graphics_protection_heatmap[[3]][[2]] +
    plot_layout(guides = 'collect') & theme(legend.position = "right")

# INPUT
fasta_filepath <- system.file("extdata", "HOIP.txt", package = "hdxstats", mustWork = TRUE)
pdb_filepath <- system.file("extdata", "5edv_chainA_clean_renumbered.pdb", package = "hdxstats", mustWork = TRUE)

# OUTPUT
graphics_protection_pdbview <- visualise_hdx_data(results, 
                                       data_selection=data_selection,
                                       type="epitope", 
                                       level="residue", 
                                       fasta=fasta_filepath,
                                       pdb=pdb_filepath)

## [1] "INFO: You selected 'epitope' to visualise from your results"
## [1] "INFO: You input FASTA file contains 16 . I will take the first entry by default."
## [1] "Your HDX input dataset has 379 entries"
## [1] "And excluding NA data you only have 379 entries"
## [1] "However, your input PDB has only 286 residues in total"
## [1] "Your scale limits are  0"    "Your scale limits are  1.37"
## [1] "Your values will be coloured using Viridis"

graphics_protection_pdbview

4 CASE STUDY 3

Sec translocon

4.1 Curate HDX-MS CSV data

Use parameter_file

#csv_filepath <- "inst/extdata/Project_2_SecA_Cluster_Data.csv" # Original raw data
#data <- read_csv(csv_filepath)
#data$Replicate <- unlist(lapply(strsplit(data$File, split="_"), function(x) tail(x, n=1)))
#write_csv(data, file = "inst/extdata/Project_2_SecA_Cluster_Data_edited.csv")

csv_filepath <- "../inst/extdata/Project_2_SecA_Cluster_Data_edited.csv"
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "../inst/extdata/Project_2_SecA_Cluster_Data.hdxp")

## [1] "INFO: You gave me a CSV file of your HDX-MSM data"
## [1] "INFO: I will pre-process your data parse it using QFeatures ..."
## [1] "INFO: You provided a 'parameter_file', I will extract parameters from this to format your output QFeatures data object."
## [1] "INFO: You provided a list of 'parameters', I will extract parameters from this to format your output QFeatures data object."
## [1] "INFO: Stripped your 'Exposure_Time' values from non-numeric characters."
## [1] "INFO: Your original_time_units == 'm'. I will convert your 'Exposure_Time' values to seconds (s)."
## [1] "INFO: Reformatting your data to a wide format..."
## [1] "INFO: Parsing your data as a qDF object class instance. Method: parseDeutData"
## [1] "INFO: Saving a list of 'Start' and 'End' residue numbers into the @metadata slot of output qDF object"
## [1] "WARNING: Your output data is not normalised."
## [1] "WARNING: Your output data was not saved. You can provide an output path with 'save = my_path'"
## [1] "INFO: I pre-processed you input CSV data content and now it's available as a QFeatures instance"

pheatmap(t(assay(hdx_data)),
         cluster_rows = FALSE, 
         cluster_cols = FALSE,
         color = brewer.pal(n = 9, name = "BuPu"),
         main = "secA : Deu Incorporation", 
         fontsize = 14,
         legend_breaks = c(0, 1, 2, 3, 4, 5, 6, max(assay(hdx_data))),
         legend_labels = c("0", "1", "2", "3", "4", "5", "6", "Incorporation"))

Post-process the data, remove undeuterated values an normalise by exchangable amides

hdx_data_undeuterated <- normalisehdx(hdx_data, method = "undeuterated")
sequences <- unique(rownames(hdx_data_undeuterated)[[1]])
hdx_data_normalised <- normalisehdx(hdx_data_undeuterated, sequences = sequences, method = "pc")

Select data for conditions (states) of interest: secA (APO state) and secA_ADP (bound state)

data_selection <- hdx_data_normalised[,c(1:17, 63:79)]

pheatmap(t(assay(data_selection)),
         cluster_rows = FALSE, 
         cluster_cols = FALSE,
         color = brewer.pal(n = 9, name = "BuPu"),
         main = "secA heatmap", 
         fontsize = 14,
         legend_breaks = c(0, 1, 2, 3, 4, 5, 6, max(assay(data_selection))),
         legend_labels = c("0", "1", "2", "3", "4", "5", "6", "Incorporation"))

4.2 Analyse Deuterium Uptake Kinetics

# INPUT
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = NULL,  d = NULL, p = 1)

# OUTPUT
results <- analyse_kinetics(data = data_selection,
                            method = "fit",
                            peptide_selection = all_peptides, 
                            start = starting_parameters)

## [1] "INFO: Performing fitting of Deuterium uptake kinetics. Method: 'hdxstats::fitUptakeKinetics' "

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in max(data$value): no non-missing arguments to max; returning -Inf

## Warning in min(data$value): no non-missing arguments to min; returning Inf

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Error in nlsModel(formula, mf, start, wts) : 
##   singular gradient matrix at initial parameter estimates
## [1] "Could not fit model, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in nls.lm(par = start, fn = FCT, jac = jac, control = control, lower = lower, : lmdif: info = 0. Improper input parameters.

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "model fit failed, likely exessive missing values"

## Warning in differentialUptakeKinetics(object = object, feature = x, start =
## start, : NAs introduced by coercion

## [1] "too few data points to fit model"

## Warning in pf(q = Fstat, df1 = d1, df2 = d2, lower.tail = FALSE): NaNs produced

## Warning in pf(q = modFstat, df1 = d1, df2 = d2, lower.tail = FALSE): NaNs
## produced

## Warning in stats::optim(x = c(0.00179856071765453, 0.000566604415177645, : one-dimensional optimization by Nelder-Mead is unreliable:
## use "Brent" or optimize() directly

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in stats::optim(x = c(0.00456279100662161, 0.000156281993885251, : one-dimensional optimization by Nelder-Mead is unreliable:
## use "Brent" or optimize() directly

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in densfun(x, parm, ...): NaNs produced

## Warning in densfun(x, parm, ...): NaNs produced

results$functional_analysis@results

## DataFrame with 209 rows and 9 columns
##                   Fstat.Fstat Fstat.numerator Fstat.denomenator       pvals
##                        <list>          <list>            <list>   <numeric>
## LGGTQ_1               0.39418      0.00179856        0.00456279 8.10901e-01
## IINAME_1              3.62553     0.000566604       0.000156282 1.89955e-02
## AMEPEM_1              13.6476     0.000866693       6.35052e-05 4.02221e-06
## MEPEM_1               21.7177      0.00159295       7.33478e-05 5.65838e-08
## EKLSDEELKGKTAE_3      6.70379     6.27997e-05       9.36778e-06 9.03359e-04
## ...                       ...             ...               ...         ...
## PGMQG_1              0.530076      0.00338574        0.00638728    0.715425
## VTGTMFL_1            0.219675       0.0176995         0.0805714    0.922320
## VYAAQSTHLPLKVNM_3           0               0       -0.00719482         NaN
## MSSQYESA_2          0.0533334      7.2702e-05        0.00136316    0.994139
## SSQYESAL_2         -0.0399229    -0.000804406          0.020149    1.000000
##                           fdr ebayes.pvals  ebayes.fdr empirical.fdr
##                     <numeric>    <numeric>   <numeric>     <numeric>
## LGGTQ_1           8.60548e-01  7.90732e-01 8.39144e-01      0.634654
## IINAME_1          2.92672e-02  1.48978e-02 2.31250e-02      0.608414
## AMEPEM_1          1.26760e-05  3.04517e-06 1.02161e-05      0.608414
## MEPEM_1           2.80225e-07  3.91138e-08 1.93706e-07      0.608414
## EKLSDEELKGKTAE_3  1.73980e-03  2.42218e-03 4.30609e-03      0.608414
## ...                       ...          ...         ...           ...
## PGMQG_1              0.767054     0.672894    0.721453      0.626279
## VTGTMFL_1            0.964033     0.901386    0.944652      0.653003
## VYAAQSTHLPLKVNM_3         NaN          NaN         NaN      1.000000
## MSSQYESA_2           1.000000     0.992779    1.000000      0.707778
## SSQYESAL_2           1.000000     1.000000    1.000000      1.000000
##                   fitcomplete
##                     <integer>
## LGGTQ_1                     1
## IINAME_1                    2
## AMEPEM_1                    3
## MEPEM_1                     4
## EKLSDEELKGKTAE_3            5
## ...                       ...
## PGMQG_1                   205
## VTGTMFL_1                 206
## VYAAQSTHLPLKVNM_3         207
## MSSQYESA_2                208
## SSQYESAL_2                209

graphics_kinetics <- visualise_hdx_data(results, type = "kinetics")

## [1] "INFO: I found  209  models in your results data"
## [1] "INFO: You selected 'kinetics' to visualise from your results"

#graphics_forest <- visualise_hdx_data(results, type="forest")

graphics_kinetics[[4]] + graphics_kinetics[[24]] + graphics_kinetics[[25]]

## Visualise Functional Analysis Results

#graphics_manhattan <- visualise_hdx_data(results, data_selection= data_selection, type="manhattan")